From long experience tuning my own Subarus and experimentation and use of different intake options... I can tell you with certainty that if you're installing an aftermarket intake (anyone's), without thorough and exhaustive tuning for that particular intake... you risk damaging your engine.
Potential problems may not be immediately apparent. People often conflate the different sound from the car with an increase in power. Their perceptions are almost always wrong. Some don't even care... they just want the cool sound, believing in whatever source helps them rationalise their decisions. Some, too many really, have paid the price of being wrong. Some will say they've been using XYZ intake for years and it works great... and souinds badaze, everyone says so. Do as you will. But don't be surprised if your car doesn't work right anymore.
About the ECU being messed up:
It isn't the ECU that's messed up, it's the data the ECU receives from the Mass Airflow Sensor, or MAF. And it's not messed up either. It's reporting exactly what it sees. But the data is wrong... because the airflow has been changed by the AFTERMARKET INTAKE.
Here is a good read if you want to know more about this subject:
http://stangsunited.com/showthread.php?3804-Warning-!!-Before-you-change-that-tune-read-this!
To make a very long story short... DO NOT install an aftermarket air intake of any kind, and don't mess with the stock system either... unles the car gets tuned for the changes. Do not, for a more insideous reason. I can tell you from personal experience that I've never met or received service from, a professional tuner who tuned the MAF properly.
It was exactly that situation with my first tuner, then repeated by another tuner Iboth dyno tuners) that made me become a self tuner. After a few years tuning my own cars, data logging every day and modifying my maps, that I realized why professional tuners don't do it correctly. They would lose money. It takes a LOT of time and miles to get right. No one is going to get a MAF curve that's accurate unless they're good at it and tuning their own cars. It just isn't worth the time and effort otherwise.
Ask away...